Conservation biology – let’s get integrated!

This was initially posted at: http://blogs.egu.eu/palaeoblog/?p=600

Conserving our world’s biodiversity is currently one of the biggest challenges we face. I wrote a post recently about some of the issues palaeontologists face when trying to make our science relative to current conservation management and biodiversity issues (and have written elsewhere about this too). This is very much a developing issue within which palaeontology is framing itself, as with ever squeezing science budgets around the world, scientists are being forced to find the hook or application that makes their research ‘relevant’ to broader society. The role that palaeontology can play for both climate change and biodiversity patterns and processes is the natural progression of science accompanying such shifts.

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Can fossil mammals help us with our conservation efforts?

This was originally posted at: http://blogs.egu.eu/palaeoblog/?p=466

How can the dead help the living? This is a question a lot of fossil-fanatics have bent a lot of time towards over recent years, partially due to a desire to make palaeontology ‘relevant’ as a modern science, and secondly to help guide our efforts in conservation biology. A new series, edited by my supervisor Dr. Phil Mannion and others, focusses on the way we interpret palaeobiodiversity, biodiversity in the fossil record, for different groups and the issues and solutions facing the field. The final article in the volume struck me in particular.

How can fossils help us to protect these now and in the future? Source.

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Panic mode, initiated?

This was originally posted at: http://blogs.egu.eu/palaeoblog/2013/03/29/panic-mode-initiated/

It’s been 6 months now, and a while since I updated y’all with what it’s like in the world of a PhD-palaeontologist. In case you missed it, my intention was to open up PhD life and research a bit to expose what it’s like beyond the simple production of research papers. Which is probably a good thing, as I don’t have any papers out yet. Setting the cultural default within academia to open is something I’m quite in to, and I guess this is my little contribution to that.

So it’s been a few months since I last posted in this series. During that time, PhD life has been both a feast and a whirlwind of writing, reading, data collection, blogging, socialising, teaching, and most importantly, learning.

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Relocation, and a chance to try some open science-ing

Shortly, this blog will be moving to a new home within the European Geosciences Union blog network! Somehow, they get the idea that a blog with the url ‘fossilsandshit’ would be appropriate for their needs. Anyway, as part of this, the blog needs to become more focussed. That means no more miscellaneous rants, no more diversions on to drugs policy, and much to my dismay, no more swearing*. Bollocks. What it does mean, is loads more Palaeontology! Possibly with some ranting (according to my tags, this is what y’all like the most anyway? How cynical.)

As such, it seems like a perfect opportunity to try something I’ve been thinking about for a while. I’m sure many have done it before, or at least had the idea, but screw it I’m doing it anyway. In about a month, I’m starting a PhD in London! I’ll be investigating the Jurassic-Cretaceous boundary to see if there’s a ‘hidden’ mass extinction in terrestrial organisms, as well as looking in detail at some groups such as atoposaurid crocodylomorphs. This is to feed into a much larger ongoing project to reconstruct the patterns and processes of vertebrate biodiversity from their origins on land to now. Neat eh!

This is what I think it’s going to be like..

So, with this in mind, and the impending relocation (although I’m not 100% clear on the details yet), I figured I’d try and sort of live-blog my PhD, from day 1 to day 1000, or however long it’s going to take. The idea is to open up the PhD process, by going into what exactly a vertebrate palaeontologist does nowadays, as well as the more general aspects of PhD life. This means going into the details of the processes, not just ‘hey look I didz a graph’, but ‘here’s how you can replicate this analysis 100% if you wanted, and here’s why it’s awesome/I’m doing it’. I’m still expecting this PhD to be an awesome ride, as opposed to some of the more negative stories floating around the interwebz recently, and hopefully will be able to convey this and show that doing a PhD is something pretty damn awesome still. Of course, it could be shit, and you might just read weekly posts of “added some data, computer died, beat up undergrad, ate soup made from cold water and ketchup”, and the like, but hopefully it’ll be a bit more of a dynamic insight than these delights.

Rationale: If I’m doing something I love, why wouldn’t I want to write about it, and if it’s something I think is awesome, why wouldn’t I wouldn’t to tell everyone else about it?? I wouldn’t be doing a PhD otherwise. Also, my memory is pretty naff, so it’ll be nice to have a record of the experience.

Some of you are probably thinking, ‘but if you open up your PhD, won’t you just get scooped on the idea you’re investigating?’ This thought has crossed my mind, but frankly, I’m not going to be doing anything that isn’t theoretically beyond anyone else’s reach anyway, as the data is all openly available, as is much of the software I’ll be using too. Naturally, I might have to keep some of the conclusions slightly secret, until I publish them in an open access journal anyway. Every publication I’m first author on in future is going to be fully available, as far as it’s possible for me to make in terms of content and data. Taxes paid by you all are allowing me to conduct this research, so I’ll be damned if a single aspect of it will be paid for again.

I’ll post weekly updates on here, and using Twitter under the #OpenPhD hash tag, when the time comes. What I hope this will achieve is some sort of dialogue were people can see not just the end result of research, but query the processes, and gain some understanding of the scientific process at the same time. And of course, opening up the discussion means that I might be able to crowd-source some valuable points of view from you great peeps!

Any feedback on this idea will be greatly appreciated, and if you want to join in then go ahead! The more the merrier!

Stand back, I’m about to try a science..

Source: Probably XKCD

*A separate outlet may have to be found for this, if (=when) needed

Deep Time Diversity Dynamics

Recently, a really important paper by Alex Dunhill of Bristol University, UK, (@AlexDunhill on Twitter) has been published looking at the problems of using rock outcrop area as a sampling proxy for understanding patterns of biodiversity in deep geological time. What this paper highlights is the important distinction between geological and anthropological sampling proxies, and their relative importance in an on-going international series of projects and collaborations in understanding the patterns and processes that influence biodiversity through geological time.

The reason that this topic is so thoroughly studied are two-fold. Firstly, the co-evolution of the Earth and it’s floral and faunal constituents through time is one of the most important questions of our time, relying on integration of molecular systematists, palaeontologists, geologists, zoologists and botanists (and microbiologists, I guess..). Secondly, understanding the responses of organisms during times of high ecological pressure, high global extinction rates, and strong climatic fluctuations is of obvious importance in the modern world, during this time of rapid global climate change and increasing anthropogenic pressure on the environment. Therefore, studies like this are crucial in aiding our understanding the diversity dynamics of extinct, but still highly relevant, groups. Continue reading